Index

A

apply_flip_classifier() (moseq2_app.flip.controller.FlipRangeTool method)

augment_dataset() (moseq2_app.flip.controller.FlipRangeTool method)

B

bcolors (class in moseq2_app.util) bokeh_plot_helper() (in module moseq2_app.roi.view)

bokeh_plotting() (in module moseq2_app.stat.view) BOLD (moseq2_app.util.bcolors attribute)

C

changed_selected_session() (moseq2_app.flip.widgets.FlipClassifierWidgets method) check_progress() (in module moseq2_app.gui.progress) check_timestamp_error_percentage() (in module moseq2_app.roi.validation) clear_clicked() (moseq2_app.gui.widgets.GroupSettingWidgets method) clear_on_click() (moseq2_app.flip.widgets.FlipClassifierWidgets method) (moseq2_app.roi.controller.InteractiveExtractionViewer method) (moseq2_app.stat.widgets.SyllableStatWidgets method) (moseq2_app.stat.widgets.TransitionGraphWidgets method) (moseq2_app.viz.widgets.CrowdMovieCompareWidgets method) (moseq2_app.viz.widgets.SyllableLabelerWidgets method)

colorscale() (in module moseq2_app.stat.view) compute_entropies() (moseq2_app.stat.controller.InteractiveTransitionGraph method) compute_entropy_differences() (moseq2_app.stat.controller.InteractiveTransitionGraph method) count_frames_with_small_areas() (in module moseq2_app.roi.validation) count_missing_mouse_frames() (in module moseq2_app.roi.validation) count_nan_rows() (in module moseq2_app.roi.validation) count_stationary_frames() (in module moseq2_app.roi.validation) crowd_movie_preview() (moseq2_app.viz.controller.CrowdMovieComparison method) CrowdMovieCompareWidgets (class in moseq2_app.viz.widgets) CrowdMovieComparison (class in moseq2_app.viz.controller) curr_frame_update() (moseq2_app.flip.widgets.FlipClassifierWidgets method)

D

display_crowd_movies() (in module moseq2_app.viz.view)

draw_stats() (in module moseq2_app.stat.view)

E

ENDC (moseq2_app.util.bcolors attribute)

F

facing_range_callback() (moseq2_app.flip.widgets.FlipClassifierWidgets method) FAIL (moseq2_app.util.bcolors attribute) find_progress() (in module moseq2_app.gui.progress) FlipClassifierWidgets (class in moseq2_app.flip.widgets)

FlipRangeTool (class in moseq2_app.flip.controller) format_graphs() (in module moseq2_app.stat.view) format_plot() (in module moseq2_app.stat.view) format_stat_plot() (in module moseq2_app.stat.view) format_trans_graph_edges() (in module moseq2_app.stat.view)

G

generate_crowd_movie_divs() (moseq2_app.viz.controller.CrowdMovieComparison method) generate_intital_progressfile() (in module moseq2_app.gui.progress) generate_missing_metadata() (in module moseq2_app.gui.progress) get_aux_stat_dfs() (in module moseq2_app.stat.view) get_ci_vect_vectorized() (in module moseq2_app.stat.view) get_corrected_data() (moseq2_app.flip.controller.FlipRangeTool method) get_crowd_movie_paths() (moseq2_app.viz.controller.SyllableLabeler method) get_datasources() (in module moseq2_app.stat.view) get_difference_legend_items() (in module moseq2_app.stat.view) get_extraction() (moseq2_app.roi.controller.InteractiveExtractionViewer method) get_extraction_progress() (in module moseq2_app.gui.progress) get_group_node_syllable_info() (in module moseq2_app.stat.view) get_legend_items() (in module moseq2_app.stat.view) get_mean_group_dict() (moseq2_app.viz.controller.CrowdMovieComparison method) (moseq2_app.viz.controller.SyllableLabeler method)

get_mean_syllable_info() (moseq2_app.viz.controller.SyllableLabeler method) get_minmax_tp() (in module moseq2_app.stat.view) get_neighbors() (in module moseq2_app.stat.view) get_node_labels() (in module moseq2_app.stat.view) get_pca_progress() (in module moseq2_app.gui.progress) get_pdf_plot() (moseq2_app.viz.controller.CrowdMovieComparison method) get_scalar_anomaly_sessions() (in module moseq2_app.roi.validation) get_scalar_df() (in module moseq2_app.roi.validation) get_selected_session_syllable_info() (moseq2_app.viz.controller.CrowdMovieComparison method) get_session_mean_syllable_info_df() (moseq2_app.viz.controller.CrowdMovieComparison method) get_session_paths() (in module moseq2_app.gui.progress) get_sessions() (in module moseq2_app.gui.progress) get_syllable_info() (in module moseq2_app.stat.view) get_trans_graph_group_stats() (in module moseq2_app.stat.view) GroupSettingWidgets (class in moseq2_app.gui.widgets)

H

HEADER (moseq2_app.util.bcolors attribute)

I

index_to_dataframe() (in module moseq2_app.util) initialize_transition_data() (moseq2_app.stat.controller.InteractiveTransitionGraph method) interactive_crowd_movie_comparison_preview_wrapper() (in module moseq2_app.gui.wrappers) interactive_launch_frame_selector() (moseq2_app.flip.controller.FlipRangeTool method) interactive_plot_transition_graph_wrapper() (in module moseq2_app.gui.wrappers) interactive_stat_helper() (moseq2_app.stat.controller.InteractiveSyllableStats method) interactive_syll_stats_grapher() (moseq2_app.stat.controller.InteractiveSyllableStats method) interactive_syllable_labeler() (moseq2_app.viz.controller.SyllableLabeler method)

interactive_syllable_labeler_wrapper() (in module moseq2_app.gui.wrappers) interactive_transition_graph_helper() (moseq2_app.stat.controller.InteractiveTransitionGraph method) interactive_view() (moseq2_app.scalars.controller.InteractiveScalarViewer method) InteractiveExtractionViewer (class in moseq2_app.roi.controller) InteractiveScalarViewer (class in moseq2_app.scalars.controller) InteractiveScalarWidgets (class in moseq2_app.scalars.widgets) InteractiveSyllableStats (class in moseq2_app.stat.controller) InteractiveTransitionGraph (class in moseq2_app.stat.controller)

L

load_progress() (in module moseq2_app.gui.progress)

load_sessions() (moseq2_app.flip.controller.FlipRangeTool method)

M

make_graphs() (moseq2_app.scalars.controller.InteractiveScalarViewer method) make_session_status_dicts() (in module moseq2_app.roi.validation) merge_labels_with_scalars() (in module moseq2_app.util) module moseq2_app.flip moseq2_app.flip.controller moseq2_app.flip.widgets moseq2_app.gui moseq2_app.gui.progress moseq2_app.gui.widgets moseq2_app.gui.wrappers moseq2_app.main moseq2_app.roi moseq2_app.roi.controller moseq2_app.roi.validation moseq2_app.roi.view moseq2_app.scalars moseq2_app.scalars.controller moseq2_app.scalars.widgets moseq2_app.stat moseq2_app.stat.controller moseq2_app.stat.view moseq2_app.stat.widgets moseq2_app.util moseq2_app.viz moseq2_app.viz.controller moseq2_app.viz.view moseq2_app.viz.widgets moseq2_app.flip module moseq2_app.flip.controller module moseq2_app.flip.widgets module moseq2_app.gui module moseq2_app.gui.progress module

moseq2_app.gui.widgets module moseq2_app.gui.wrappers module moseq2_app.main module moseq2_app.roi module moseq2_app.roi.controller module moseq2_app.roi.validation module moseq2_app.roi.view module moseq2_app.scalars module moseq2_app.scalars.controller module moseq2_app.scalars.widgets module moseq2_app.stat module moseq2_app.stat.controller module moseq2_app.stat.view module moseq2_app.stat.widgets module moseq2_app.util module moseq2_app.viz module moseq2_app.viz.controller module moseq2_app.viz.view module moseq2_app.viz.widgets module

O

OKBLUE (moseq2_app.util.bcolors attribute) OKCYAN (moseq2_app.util.bcolors attribute) OKGREEN (moseq2_app.util.bcolors attribute) on_clear() (moseq2_app.scalars.widgets.InteractiveScalarWidgets method) on_click_trigger_button() (moseq2_app.viz.widgets.CrowdMovieCompareWidgets method) on_column_select() (moseq2_app.scalars.widgets.InteractiveScalarWidgets method)

on_delete_selection_clicked() (moseq2_app.flip.widgets.FlipClassifierWidgets method) on_grouping_update() (moseq2_app.stat.widgets.SyllableStatWidgets method) on_next() (moseq2_app.viz.widgets.SyllableLabelerWidgets method) on_prev() (moseq2_app.viz.widgets.SyllableLabelerWidgets method) on_selected_range_value() (moseq2_app.flip.widgets.FlipClassifierWidgets method) on_set() (moseq2_app.viz.widgets.SyllableLabelerWidgets method)

P

plot_dendrogram() (in module moseq2_app.stat.view) plot_interactive_transition_graph() (in module moseq2_app.stat.view) plot_xy_examples() (moseq2_app.flip.controller.FlipRangeTool method)

prepare_datasets() (moseq2_app.flip.controller.FlipRangeTool method) print_progress() (in module moseq2_app.gui.progress) print_validation_results() (in module moseq2_app.roi.validation) progress_path_sanity_check() (in module moseq2_app.gui.progress)

R

read_and_clean_config() (in module moseq2_app.util) restore_progress_vars() (in module moseq2_app.gui.progress)

run_selected_hypothesis_test() (moseq2_app.stat.controller.InteractiveSyllableStats method) run_validation_tests() (in module moseq2_app.roi.validation)

S

select_session() (moseq2_app.viz.widgets.CrowdMovieCompareWidgets method) set_default_cm_parameters() (moseq2_app.viz.controller.CrowdMovieComparison method) (moseq2_app.viz.controller.SyllableLabeler method) set_fill_color() (in module moseq2_app.stat.view) set_group_info_widgets() (moseq2_app.viz.controller.SyllableLabeler method) set_grouping_colors() (in module moseq2_app.stat.view) set_node_colors_and_sizes() (in module moseq2_app.stat.view) set_node_labels() (in module moseq2_app.stat.view) set_range_widget_values() (moseq2_app.stat.widgets.TransitionGraphWidgets method) setup_graph_hover_renderers() (in module moseq2_app.stat.view) setup_hovertool() (in module moseq2_app.stat.view)

setup_model_folders() (in module moseq2_app.util) setup_node_and_edge_interactions() (in module moseq2_app.stat.view) setup_slider() (in module moseq2_app.stat.view) setup_syllable_search() (in module moseq2_app.stat.view) setup_trans_graph_tooltips() (in module moseq2_app.stat.view) show_extraction() (in module moseq2_app.roi.view) show_session_select() (moseq2_app.viz.widgets.CrowdMovieCompareWidgets method) start_stop_frame_range() (moseq2_app.flip.widgets.FlipClassifierWidgets method) SyllableLabeler (class in moseq2_app.viz.controller) SyllableLabelerWidgets (class in moseq2_app.viz.widgets) SyllableStatBokehCallbacks (class in moseq2_app.stat.widgets) SyllableStatWidgets (class in moseq2_app.stat.widgets)

T

train_and_evaluate_model() (moseq2_app.flip.controller.FlipRangeTool method)

TransitionGraphWidgets (class in moseq2_app.stat.widgets)

U

UNDERLINE (moseq2_app.util.bcolors attribute) update_clicked() (moseq2_app.gui.widgets.GroupSettingWidgets method) update_config() (in module moseq2_app.util) update_model_paths() (in module moseq2_app.util)

update_progress() (in module moseq2_app.gui.progress) update_state_on_selected_range() (moseq2_app.flip.widgets.FlipClassifierWidgets method) update_table() (moseq2_app.gui.widgets.GroupSettingWidgets method) uuid_lookup() (in module moseq2_app.util)

V

validate_extractions_wrapper() (in module moseq2_app.gui.wrappers)

validate_inputs() (in module moseq2_app.main)

W

WARNING (moseq2_app.util.bcolors attribute)

write_syll_info() (moseq2_app.viz.controller.SyllableLabeler method) write_yaml() (in module moseq2_app.util)